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Abstract The Yukon‐Kuskokwim Delta has the largest intertidal wetland in North America, is a globally critical breeding area for waterbirds, and is home to the largest regional indigenous population in the Arctic. Here, coastal tundra ecosystems, wildlife, and indigenous communities are highly vulnerable to sea‐ice loss in the Bering Sea, sea‐level rise, storm flooding, erosion, and collapsing ground from permafrost thaw caused by climate warming. These drivers interact in non‐linear ways to increase flooding, salinization, and sedimentation, and thus, alter ecosystem trajectories and broader landscape evolution. Rapid changes in these factors over decadal time scales are highly likely to cause transformative shifts in coastal ecosystems across roughly 70% of the outer delta this century. We project saline and brackish ecotypes on the active delta floodplain with frequent sedimentation will maintain dynamic equilibrium with sea‐level rise and flooding, slightly brackish ecotypes on the inactive floodplain with infrequent flooding and low sedimentation rates will be vulnerable to increased flooding and likely transition to more saline and brackish ecotypes, and fresh lacustrine and lowland ecotypes on the abandoned floodplain with permafrost plateaus will be vulnerable to thermokarst, salinization and flooding that will shift them toward brackish ecosystems. This will greatly affect bird nesting and foraging habitats, with both winners and losers. Already, some Yup'ik communities are facing relocation of their low‐lying villages. The societal challenges and consequences of adapting to these changing landscapes are enormous and will require a huge societal effort.